MolNFT v1 · #189595 · protein
Cryo-EM structure of listeria monocytogenes man-pts complexed with pediocin pa-1
7VLY: “Cryo-EM structure of listeria monocytogenes man-pts complexed with pediocin pa-1”. Electron microscopy, 1 ligand (MAN). MolNFT v1 #189595 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7VLY
- Type
- protein
- Length
- 1,773 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- S5LAD9, A0A1E8EBU8, P29430
- Ligands
- MAN
Structure
electron microscopy · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| Y, C, F | — | protein | 247 | — | S5LAD9 |
| Z, D, G | — | protein | 297 | — | A0A1E8EBU8 |
| A, E, H | — | protein | 47 | — | P29430 |
Ligands and binding sites
- MAN · alpha-D-mannopyranose · sugar · 3 copies · chains Y, Z, C, D, F, G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7VLY · Cryo-EM structure of Listeria monocytogenes man-PTS complexed with pediocin PA-1 · the same entry in another collection · chain D against D, TM-score 1.00
- P29430 · AlphaFold monomer V2.0 prediction for bacteriocin pediocin pa-1 (P29430) · a predicted model of the same protein · chain A against A, TM-score 0.85
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt S5LAD9
- Every structure of UniProt A0A1E8EBU8
- Every structure of UniProt P29430
- Elsewhere: RCSB PDB 7VLY · PDBe 7VLY · UniProt S5LAD9 · UniProt A0A1E8EBU8 · UniProt P29430
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