MolNFT v1 · #189561 · protein

The apo structure of beta-1,2-glucosyltransferase from ignavibacterium album

7VKW: “The apo structure of beta-1,2-glucosyltransferase from ignavibacterium album”. X-ray diffraction, 17 pockets (best druggability 0.83). MolNFT v1 #189561 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7VKW
Type: protein
Length: 1,409 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Beta-1,2-glucosyltransferase
UniProt: I0AIT9
Pockets: 17 · best druggability 0.83

Structure

x-ray diffraction · 2 distinct chains · 36% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Beta-1,2-glucosyltransferase	protein	705	35% helix, 25% strand	I0AIT9
B	Beta-1,2-glucosyltransferase	protein	704	36% helix, 24% strand	I0AIT9

Pockets

17 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	814	0.83	0.86	122	empty
2	67	0.74	0.98	24	empty
3	259	0.72	0.87	35	empty
4	373	0.66	0.80	52	empty
5	234	0.65	0.83	45	empty

Interfaces

1 interface between chains.

A–B · 1882 Å² buried · 25 hydrogen bonds · protein-protein

Compared structures

7VKW · The apo structure of beta-1,2-glucosyltransferase from Ignavibacterium album · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt I0AIT9
Elsewhere: RCSB PDB 7VKW · PDBe 7VKW · UniProt I0AIT9

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