MolNFT v1 · #189540 · protein
Crystal structure of SARS-cov-2 mpro at 2.0 a resolution -9
7VK2 · 3C-like proteinase: “Crystal structure of SARS-cov-2 mpro at 2.0 a resolution -9”. X-ray diffraction, 3 pockets (best druggability 0.52). MolNFT v1 #189540 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7VK2
- Type
- protein
- Length
- 306 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 3C-like proteinase
- EC
- 3.4.22.69
- UniProt
- P0DTC1
- Pockets
- 3 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 25% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 3C-like proteinase (EC 3.4.22.69) | protein | 306 | 25% helix, 28% strand | P0DTC1 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 72 | 0.52 | 0.85 | 18 | empty |
| 2 | 156 | 0.47 | 0.77 | 20 | empty |
| 3 | 147 | 0.42 | 0.75 | 26 | empty |
Compared structures
- 7VK2 · Crystal Structure of SARS-CoV-2 Mpro at 2.0 A resolution -9 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC1
- Elsewhere: RCSB PDB 7VK2 · PDBe 7VK2 · UniProt P0DTC1
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