MolNFT v1 · #189493 · protein
Asymmetric unit of cryoem structure of bacteriophage lambda capsid at 3.76 ångström
7VIK · Major capsid protein: “Asymmetric unit of cryoem structure of bacteriophage lambda capsid at 3.76 ångström”. Electron microscopy, 20 pockets (best druggability 0.72). MolNFT v1 #189493 on GenesisL1: 3D structure, binding sites and…
- PDB
- 7VIK
- Type
- protein
- Length
- 3,136 residues
- Chains
- 14
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Major capsid protein; Capsid decoration protein
- UniProt
- P03713, P03712
- Pockets
- 20 · best druggability 0.72
Structure
electron microscopy · 2 distinct chains · 15% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G | Major capsid protein | protein | 339 | 19% helix, 24% strand | P03713 |
| H, I, J, K, L, M, N | Capsid decoration protein | protein | 109 | 5% helix, 32% strand | P03712 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 682 | 0.72 | 0.79 | 87 | empty |
| 2 | 452 | 0.69 | 0.80 | 79 | empty |
| 3 | 114 | 0.69 | 0.91 | 24 | empty |
| 4 | 121 | 0.68 | 0.90 | 26 | empty |
| 5 | 257 | 0.63 | 0.81 | 47 | empty |
Interfaces
38 interfaces between chains.
- A–B · 3242 Ų buried · 45 hydrogen bonds · protein-protein
- D–E · 3155 Ų buried · 38 hydrogen bonds · protein-protein
- C–D · 3086 Ų buried · 39 hydrogen bonds · protein-protein
- A–F · 3071 Ų buried · 40 hydrogen bonds · protein-protein
- E–F · 3064 Ų buried · 42 hydrogen bonds · protein-protein
Compared structures
- 7VIK · Asymmetric unit of cryoEM structure of bacteriophage lambda capsid at 3.76 Angstrom · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03713
- Every structure of UniProt P03712
- Elsewhere: RCSB PDB 7VIK · PDBe 7VIK · UniProt P03713 · UniProt P03712
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