MolNFT v1 · #189420 · protein

Plexin B1 extracellular fragment in complex with lasso-grafted PB1M7 peptide

7VF3: “Plexin B1 extracellular fragment in complex with lasso-grafted PB1M7 peptide”. X-ray diffraction, 1 ligand (NAG). MolNFT v1 #189420 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7VF3
Type: protein
Length: 1,018 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: O43157, P11684
Ligands: NAG

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	494	—	O43157
B, D	—	protein	15	—	P11684
C	—	protein	494	—	O43157

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A, C
PG4 · Tetraethylene glycol · additive · 4 copies · chains A, C
PEG · Di(hydroxyethyl)ether · additive · chains A
PGE · Triethylene glycol · additive · chains C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7VF3 · Plexin B1 extracellular fragment in complex with lasso-grafted PB1m7 peptide · the same entry in another collection · chain A against A, TM-score 1.00
O43157 · AlphaFold monomer V2.0 prediction for plexin-B1 (O43157) · a predicted model of the same protein · chain C against A, TM-score 0.97
P11684 · AlphaFold monomer V2.0 prediction for uteroglobin (P11684) · a predicted model of the same protein · chain B against A, TM-score 0.45

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O43157
Every structure of UniProt P11684
Elsewhere: RCSB PDB 7VF3 · PDBe 7VF3 · UniProt O43157 · UniProt P11684

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