MolNFT v1 · #189413 · protein

Crystal structure of bacterial chemotaxis-dependent pectin-binding protein SPH1118 in complex with galacturonic acid

7VEU: “Crystal structure of bacterial chemotaxis-dependent pectin-binding protein SPH1118 in complex with…”. X-ray diffraction, 1 ligand (ADA), 3 pockets (best druggability 0.85). MolNFT v1 #189413 on GenesisL1: 3D structure, binding sites…

PDB: 7VEU
Type: protein
Length: 612 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: SPH1118
Ligands: ADA
Pockets: 3 · best druggability 0.85

Structure

x-ray diffraction · 1 distinct chain · 33% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	SPH1118	protein	612	33% helix, 20% strand	—

Ligands and binding sites

ADA · alpha-D-galactopyranuronic acid · sugar · chains A
GOL · Glycerol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1091	0.85	0.86	101	GOL, ADA
2	64	0.39	0.79	21	empty
3	91	0.38	0.76	14	empty

Compared structures

7VEU · Crystal structure of bacterial chemotaxis-dependent pectin-binding protein SPH1118 in… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 7VEU · PDBe 7VEU

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