MolNFT v1 · #189412 · protein
Crystal structure of bacterial chemotaxis-dependent pectin-binding protein SPH1118 in a closed conformation
7VET: “Crystal structure of bacterial chemotaxis-dependent pectin-binding protein SPH1118 in a closed conformation”. X-ray diffraction, 6 pockets (best druggability 0.85). MolNFT v1 #189412 on GenesisL1: 3D structure, binding sites and…
- PDB
- 7VET
- Type
- protein
- Length
- 1,218 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SPH1118
- Pockets
- 6 · best druggability 0.85
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | SPH1118 | protein | 609 | 33% helix, 20% strand | — |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1041 | 0.85 | 0.86 | 97 | empty |
| 2 | 1197 | 0.84 | 0.85 | 105 | empty |
| 3 | 78 | 0.42 | 0.79 | 13 | empty |
| 4 | 78 | 0.41 | 0.79 | 13 | empty |
| 5 | 95 | 0.39 | 0.76 | 24 | empty |
Interfaces
1 interface between chains.
- A–B · 264 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 7VET · Crystal structure of bacterial chemotaxis-dependent pectin-binding protein SPH1118 in a… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7VET · PDBe 7VET
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