MolNFT v1 · #189335 · protein
Crystal structure of hydroxynitrile lyase from linum usitatissimum complexed with acetone cyanohydrin
7VB5: “Crystal structure of hydroxynitrile lyase from linum usitatissimum complexed with acetone cyanohydrin”. X-ray diffraction, 5 ligands (NAD, CNH, ACN). MolNFT v1 #189335 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7VB5
- Type
- protein
- Length
- 1,648 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P93243
- Ligands
- NAD, CNH, ACN, ZN, MG
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 412 | — | P93243 |
| B, D | — | protein | 414 | — | P93243 |
| C | — | protein | 408 | — | P93243 |
Ligands and binding sites
- NAD · Nicotinamide-adenine-dinucleotide · ligand · 4 copies · chains A, B, C, D
- CNH · 2-hydroxy-2-methylpropanenitrile · ligand · 3 copies · chains A, B, C, D
- ACN · Acetone · ligand · chains D
- ZN · Zinc ion · metal · 8 copies · chains A, B, C, D
- MG · Magnesium ion · metal · 4 copies · chains A, B, C, D
- EDO · 1,2-ethanediol · additive · 28 copies · chains A, B, C, D
- GOL · Glycerol · additive · 5 copies · chains A, B
- BTB · 2-[bis-(2-hydroxy-ethyl)-amino]-2-hydroxymethyl-propane-1,3-diol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7VB5 · Crystal structure of hydroxynitrile lyase from Linum usitatissimum complexed with acetone… · the same entry in another collection · chain D against D, TM-score 1.00
- P93243 · AlphaFold monomer V2.0 prediction for aliphatic (R)-hydroxynitrile lyase (P93243) · a predicted model of the same protein · chain D against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P93243
- Elsewhere: RCSB PDB 7VB5 · PDBe 7VB5 · UniProt P93243
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