MolNFT v1 · #189333 · protein

Crystal structure of hydroxynitrile lyase from linum usitatissimum

7VB3: “Crystal structure of hydroxynitrile lyase from linum usitatissimum”. X-ray diffraction, 3 ligands (NAD, ZN, MG). MolNFT v1 #189333 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7VB3
Type: protein
Length: 1,639 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P93243
Ligands: NAD, ZN, MG

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, D	—	protein	408	—	P93243
B	—	protein	414	—	P93243
C	—	protein	409	—	P93243

Ligands and binding sites

NAD · Nicotinamide-adenine-dinucleotide · ligand · 4 copies · chains A, B, C, D
ZN · Zinc ion · metal · 8 copies · chains A, B, C, D
MG · Magnesium ion · metal · 4 copies · chains A, B, C, D
GOL · Glycerol · additive · 11 copies · chains A, B, C, D
EDO · 1,2-ethanediol · additive · 9 copies · chains A, B, C, D
BTB · 2-[bis-(2-hydroxy-ethyl)-amino]-2-hydroxymethyl-propane-1,3-diol · additive · 3 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7VB3 · Crystal structure of hydroxynitrile lyase from Linum usitatissimum · the same entry in another collection · chain D against D, TM-score 1.00
P93243 · AlphaFold monomer V2.0 prediction for aliphatic (R)-hydroxynitrile lyase (P93243) · a predicted model of the same protein · chain C against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P93243
Elsewhere: RCSB PDB 7VB3 · PDBe 7VB3 · UniProt P93243

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