MolNFT v1 · #189330 · protein

The crystal structure of COVID-19 main protease in H41A mutation

7VAH · 3C-like proteinase: “The crystal structure of COVID-19 main protease in H41A mutation”. X-ray diffraction, 2 pockets (best druggability 0.52). MolNFT v1 #189330 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7VAH
Type: protein
Length: 306 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 3C-like proteinase
EC: 3.4.22.69
UniProt: P0DTD1
Pockets: 2 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 25% helix, 29% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	3C-like proteinase (EC 3.4.22.69)	protein	306	25% helix, 29% strand	P0DTD1

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	224	0.52	0.76	29	empty
2	75	0.33	0.75	16	empty

Compared structures

7VAH · The crystal structure of COVID-19 main protease in H41A mutation · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0DTD1
Elsewhere: RCSB PDB 7VAH · PDBe 7VAH · UniProt P0DTD1

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