MolNFT v1 · #189316 · protein

Crystal structure of the lanthipeptide zinc-metallopeptidase eryp from saccharopolyspora erythraea in open state

7V9Q · Alanine aminopeptidase: “Crystal structure of the lanthipeptide zinc-metallopeptidase eryp from saccharopolyspora erythraea in open…”. X-ray diffraction, 1 ligand (ZN), 5 pockets (best druggability 0.73). MolNFT v1 #189316 on…

PDB: 7V9Q
Type: protein
Length: 859 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Alanine aminopeptidase
EC: 3.4.11.2
UniProt: A4F9D7
Ligands: ZN
Pockets: 5 · best druggability 0.73

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Alanine aminopeptidase (EC 3.4.11.2)	protein	859	45% helix, 22% strand	A4F9D7

Ligands and binding sites

ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	823	0.73	0.78	86	empty
2	438	0.60	0.75	39	empty
3	167	0.44	0.74	29	empty
4	165	0.44	0.75	28	empty
5	94	0.37	0.76	17	empty

Compared structures

7V9Q · Crystal structure of the lanthipeptide zinc-metallopeptidase EryP from saccharopolyspora… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A4F9D7
Elsewhere: RCSB PDB 7V9Q · PDBe 7V9Q · UniProt A4F9D7

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