MolNFT v1 · #189267 · protein

Cryo-EM structure of SARS-cov-2 S-kappa variant (B.1.617.1) in complex with angiotensin-converting enzyme 2 (ACE2) ectodomain, three ACE2- bound form

7V86: “Cryo-EM structure of SARS-cov-2 S-kappa variant (B.1.617.1) in complex with angiotensin-converting enzyme 2…”. Electron microscopy, 1 ligand (NAG). MolNFT v1 #189267 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7V86
Type: protein
Length: 4,881 residues
Chains: 6
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P0DTC2, Q9BYF1
Ligands: NAG

Structure

electron microscopy · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C	—	protein	1031	—	P0DTC2
F, G, H	—	protein	596	—	Q9BYF1

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 87 copies · chains A, C, B, F

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7V86 · Cryo-EM structure of SARS-CoV-2 S-Kappa variant (B.1.617.1) in complex with… · the same entry in another collection · chain H against H, TM-score 1.00
3SCJ · Crystal structure of spike protein receptor-binding domain from a predicted SARS… · a predicted model of the same protein · chain F against A, TM-score 0.99
3SCJ · Crystal structure of spike protein receptor-binding domain from a predicted SARS… · a predicted model of the same protein · chain F against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0DTC2
Every structure of UniProt Q9BYF1
Elsewhere: RCSB PDB 7V86 · PDBe 7V86 · UniProt P0DTC2 · UniProt Q9BYF1

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