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MolNFT v1 · #189264 · protein

Cryo-EM structure of SARS-cov-2 S-gamma variant (P.1) in complex with angiotensin-converting enzyme 2 (ACE2) ectodomain, three ACE2-bound form conformation 2

7V83: “Cryo-EM structure of SARS-cov-2 S-gamma variant (P.1) in complex with angiotensin-converting enzyme 2 (ACE2)…”. Electron microscopy, 1 ligand (NAG). MolNFT v1 #189264 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7V83
Type
protein
Length
4,902 residues
Chains
6
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P0DTC2, Q9BYF1
Ligands
NAG

Structure

electron microscopy · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A, B, C—protein1038—P0DTC2
D, E, F—protein596—Q9BYF1

Ligands and binding sites

  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 89 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7V83 · Cryo-EM structure of SARS-CoV-2 S-Gamma variant (P.1) in complex with… · the same entry in another collection · chain F against F, TM-score 1.00
  • 3SCJ · Crystal structure of spike protein receptor-binding domain from a predicted SARS… · a predicted model of the same protein · chain D against A, TM-score 0.98
  • 3SCJ · Crystal structure of spike protein receptor-binding domain from a predicted SARS… · a predicted model of the same protein · chain D against A, TM-score 0.98
  • 3SCI · Crystal structure of spike protein receptor-binding domain from a predicted SARS… · a predicted model of the same protein · chain D against A, TM-score 0.98
  • 3SCI · Crystal structure of spike protein receptor-binding domain from a predicted SARS… · a predicted model of the same protein · chain D against A, TM-score 0.98

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