MolNFT v1 · #189215 · protein
Structure of candida albicans fructose-1,6-bisphosphate aldolase complexed with G3P
7V6F · Fructose-bisphosphate aldolase: “Structure of candida albicans fructose-1,6-bisphosphate aldolase complexed with G3P”. X-ray diffraction, 2 ligands (G3H, ZN), 7 pockets (best druggability 0.72). MolNFT v1 #189215 on GenesisL1: 3D…
- PDB
- 7V6F
- Type
- protein
- Length
- 672 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fructose-bisphosphate aldolase
- EC
- 4.1.2.13
- UniProt
- Q9URB4
- Ligands
- G3H, ZN
- Pockets
- 7 · best druggability 0.72
Structure
x-ray diffraction · 2 distinct chains · 51% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fructose-bisphosphate aldolase (EC 4.1.2.13) | protein | 335 | 49% helix, 12% strand | Q9URB4 |
| B | Fructose-bisphosphate aldolase (EC 4.1.2.13) | protein | 337 | 53% helix, 13% strand | Q9URB4 |
Ligands and binding sites
- G3H · Glyceraldehyde-3-phosphate · ligand · chains A, B
- ZN · Zinc ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 102 | 0.72 | 0.93 | 20 | empty |
| 2 | 190 | 0.43 | 0.73 | 27 | empty |
| 3 | 141 | 0.42 | 0.75 | 23 | G3H |
| 4 | 100 | 0.38 | 0.76 | 19 | empty |
| 5 | 96 | 0.38 | 0.76 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 2121 Ų buried · 24 hydrogen bonds · protein-protein
Compared structures
- 7V6F · Structure of Candida albicans Fructose-1,6-bisphosphate aldolase complexed with G3P · the same entry in another collection · chain A against A, TM-score 1.00
- Q9URB4 · AlphaFold monomer V2.0 prediction for fructose-bisphosphate aldolase (Q9URB4) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9URB4
- Elsewhere: RCSB PDB 7V6F · PDBe 7V6F · UniProt Q9URB4
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