MolNFT v1 · #189178 · protein
Crystal structure of full-length phospholipase D from pseudomonas aeruginosa PAO1
7V53: “Crystal structure of full-length phospholipase D from pseudomonas aeruginosa PAO1”. X-ray diffraction, 13 pockets (best druggability 0.78). MolNFT v1 #189178 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7V53
- Type
- protein
- Length
- 930 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phospholipase D
- UniProt
- Q9HYC2
- Pockets
- 13 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phospholipase D | protein | 930 | 40% helix, 15% strand | Q9HYC2 |
Pockets
13 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 87 | 0.78 | 0.99 | 29 | empty |
| 2 | 883 | 0.74 | 0.78 | 82 | empty |
| 3 | 209 | 0.56 | 0.79 | 41 | empty |
| 4 | 138 | 0.54 | 0.81 | 23 | empty |
| 5 | 257 | 0.52 | 0.75 | 38 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 7V53 · Crystal structure of full-length phospholipase D from Pseudomonas aeruginosa PAO1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HYC2
- Elsewhere: RCSB PDB 7V53 · PDBe 7V53 · UniProt Q9HYC2
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