MolNFT v1 · #188952 · protein
Pseudobacteroides cellulosolvens pseudo-cphb
7UQV · Cyanophycinase: “Pseudobacteroides cellulosolvens pseudo-cphb”. X-ray diffraction, 8 pockets (best druggability 0.81). MolNFT v1 #188952 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7UQV
- Type
- protein
- Length
- 1,038 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cyanophycinase
- EC
- 3.4.15.6
- UniProt
- A0A0L6JSP1
- Pockets
- 8 · best druggability 0.81
Structure
x-ray diffraction · 3 distinct chains · 29% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cyanophycinase (EC 3.4.15.6) | protein | 259 | 29% helix, 30% strand | A0A0L6JSP1 |
| B | Cyanophycinase (EC 3.4.15.6) | protein | 259 | 28% helix, 30% strand | A0A0L6JSP1 |
| D, C | Cyanophycinase (EC 3.4.15.6) | protein | 260 | 29% helix, 31% strand | A0A0L6JSP1 |
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 413 | 0.81 | 0.89 | 45 | empty |
| 2 | 734 | 0.78 | 0.82 | 88 | empty |
| 3 | 326 | 0.62 | 0.79 | 47 | empty |
| 4 | 128 | 0.43 | 0.76 | 28 | empty |
| 5 | 86 | 0.39 | 0.78 | 21 | empty |
Interfaces
3 interfaces between chains.
- B–D · 1396 Ų buried · 19 hydrogen bonds · protein-protein
- D–C · 1183 Ų buried · 25 hydrogen bonds · protein-protein
- A–B · 1145 Ų buried · 18 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 7UQV · Pseudobacteroides cellulosolvens pseudo-CphB · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0L6JSP1
- Elsewhere: RCSB PDB 7UQV · PDBe 7UQV · UniProt A0A0L6JSP1
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