MolNFT v1 · #188947 · protein
Three rbd-down state of SARS-cov-2 D614G spike in complex with the SP1-77 neutralizing antibody Fab fragment (local refinement of the rbd and Fab variable domains)
7UPX: “Three rbd-down state of SARS-cov-2 D614G spike in complex with the SP1-77 neutralizing antibody Fab fragment…”. Electron microscopy, 2 ligands (NAG, FUC). MolNFT v1 #188947 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 7UPX
- Type
- protein
- Length
- 635 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- NAG, FUC
Structure
electron microscopy · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 198 | — | P0DTC2 |
| H | — | protein | 225 | — | — |
| L | — | protein | 212 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A, H
- FUC · alpha-L-fucopyranose · sugar · chains H, L
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7UPX · Three RBD-down state of SARS-CoV-2 D614G spike in complex with the SP1-77 neutralizing… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7UPX · PDBe 7UPX · UniProt P0DTC2
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