MolNFT v1 · #188911 · RNA

DENV1 sla three-way junction RNA (denvslash)

7UMD · RNA (40-mer): “DENV1 sla three-way junction RNA (denvslash)”. Solution nmr, 2 pockets (best druggability 0.56). MolNFT v1 #188911 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7UMD
Type: RNA
Length: 40 nucleotides
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA (40-mer)
Pockets: 2 · best druggability 0.56

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA (40-mer)	rna	40	—	—

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	393	0.56	0.75	20	empty
2	92	0.38	0.77	8	empty

Compared structures

7UMD · DENV1 SLA three-way junction RNA (DenvSLAsh) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 7UMD · PDBe 7UMD

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