MolNFT v1 · #188839 · protein
SARS-cov-2 spike in complex with AHB2-2GS-SB175 (local refinement of the rbd and AHB2)
7UHB · Spike glycoprotein: “SARS-cov-2 spike in complex with AHB2-2GS-SB175 (local refinement of the rbd and AHB2)”. Electron microscopy, 2 ligands (NAG, FUC), 1 pocket (best druggability 0.65). MolNFT v1 #188839 on GenesisL1: 3D…
- PDB
- 7UHB
- Type
- protein
- Length
- 270 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Spike glycoprotein; Multivalent miniprotein inhibitor AHB2-2GS-SB175
- UniProt
- P0DTC2
- Ligands
- NAG, FUC
- Pockets
- 1 · best druggability 0.65
Structure
electron microscopy · 2 distinct chains · 33% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C | Spike glycoprotein | protein | 195 | 12% helix, 29% strand | P0DTC2 |
| K | Multivalent miniprotein inhibitor AHB2-2GS-SB175 | protein | 75 | 87% helix, 0% strand | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains C
- FUC · alpha-L-fucopyranose · sugar
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 141 | 0.65 | 0.87 | 28 | empty |
Interfaces
1 interface between chains.
- C–K · 945 Ų buried · 9 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 disulfide, 1 glycan (disulfide, N-glycosylation).
Compared structures
- 7UHB · SARS-CoV-2 spike in complex with AHB2-2GS-SB175 (local refinement of the RBD and AHB2) · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7UHB · PDBe 7UHB · UniProt P0DTC2
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.