MolNFT v1 · #188736 · protein
Crystal structure of the wild type escherichia COLI pyridoxal 5'- phosphate homeostasis protein (yggs)
7U9C · Pyridoxal phosphate homeostasis protein: “Crystal structure of the wild type escherichia COLI pyridoxal 5'- phosphate homeostasis protein (yggs)”. X-ray diffraction, 2 ligands (PLP, PO4), 2 pockets (best druggability 0.41). MolNFT…
- PDB
- 7U9C
- Type
- protein
- Length
- 226 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pyridoxal phosphate homeostasis protein
- UniProt
- C3SV52
- Ligands
- PLP, PO4
- Pockets
- 2 · best druggability 0.41
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pyridoxal phosphate homeostasis protein | protein | 226 | 49% helix, 18% strand | C3SV52 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 114 | 0.41 | 0.76 | 27 | PLP |
| 2 | 88 | 0.41 | 0.78 | 21 | empty |
Modifications
Observed in the structure: 1 cofactor (pyridoxal phosphate Schiff base).
Compared structures
- 7U9C · Crystal Structure of the wild type Escherichia coli Pyridoxal 5'-phosphate homeostasis… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C3SV52
- Elsewhere: RCSB PDB 7U9C · PDBe 7U9C · UniProt C3SV52
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.