MolNFT v1 · #188651 · protein
Structure of paenibacillus sp. J14 APYC1
7U2R: “Structure of paenibacillus sp. J14 APYC1”. X-ray diffraction, 1 ligand (ZN), 1 pocket (best druggability 0.31). MolNFT v1 #188651 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7U2R
- Type
- protein
- Length
- 244 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- APYC1
- UniProt
- C6J7N0
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.31
Structure
x-ray diffraction · 1 distinct chain · 27% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | APYC1 | protein | 244 | 27% helix, 29% strand | C6J7N0 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 56 | 0.31 | 0.76 | 12 | empty |
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 7U2R · Structure of Paenibacillus sp. J14 Apyc1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C6J7N0
- Elsewhere: RCSB PDB 7U2R · PDBe 7U2R · UniProt C6J7N0
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