MolNFT v1 · #188473 · protein

Stable-5-lox elongated HA2

7TTJ · Arachidonate 5-lipoxygenase: “Stable-5-lox elongated HA2”. X-ray diffraction, 1 ligand (FE2), 12 pockets (best druggability 0.80). MolNFT v1 #188473 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7TTJ
Type: protein
Length: 1,233 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Arachidonate 5-lipoxygenase
EC: 1.13.11.34
UniProt: P09917
Ligands: FE2
Pockets: 12 · best druggability 0.80

Structure

x-ray diffraction · 2 distinct chains · 44% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	Arachidonate 5-lipoxygenase (EC 1.13.11.34)	protein	590	43% helix, 16% strand	P09917
A	Arachidonate 5-lipoxygenase (EC 1.13.11.34)	protein	643	46% helix, 14% strand	P09917

Ligands and binding sites

FE2 · Fe (II) ion · metal · 2 copies · chains B, A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

12 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	793	0.80	0.83	72	empty
2	679	0.78	0.83	56	empty
3	540	0.78	0.84	79	empty
4	632	0.77	0.82	76	empty
5	528	0.69	0.79	50	empty

Interfaces

1 interface between chains.

B–A · 1122 Å² buried · 13 hydrogen bonds · protein-protein

Compared structures

7TTJ · Stable-5-LOX elongated Ha2 · the same entry in another collection · chain B against B, TM-score 1.00
P09917 · AlphaFold monomer V2.0 prediction for polyunsaturated fatty acid 5-lipoxygenase (P09917) · a predicted model of the same protein · chain B against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P09917
Elsewhere: RCSB PDB 7TTJ · PDBe 7TTJ · UniProt P09917

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