MolNFT v1 · #188430 · protein
Crystal structure of the DNA-binding domain of the lysr family transcriptional regulator yfba from yersinia pestis
7TRV: “Crystal structure of the DNA-binding domain of the lysr family transcriptional regulator yfba from yersinia…”. X-ray diffraction, 2 ligands (CL, SO4). MolNFT v1 #188430 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7TRV
- Type
- protein
- Length
- 353 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8D0G2
- Ligands
- CL, SO4
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 89 | — | Q8D0G2 |
| B | — | protein | 86 | — | Q8D0G2 |
| D | — | protein | 89 | — | Q8D0G2 |
Ligands and binding sites
- CL · Chloride ion · ion · 8 copies · chains A, B, C, D
- SO4 · Sulfate ion · ion · 6 copies · chains A, C, B, D
- GOL · Glycerol · additive · 3 copies · chains B, C, D
- FMT · Formic acid · additive · 3 copies · chains B, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7TRV · Crystal Structure of the DNA-Binding Domain of the LysR family Transcriptional Regulator… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8D0G2
- Elsewhere: RCSB PDB 7TRV · PDBe 7TRV · UniProt Q8D0G2
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