MolNFT v1 · #188304 · protein
Structure of atopobium parvulum sufs
7TLM · Cysteine desulfurase: “Structure of atopobium parvulum sufs”. X-ray diffraction, 1 ligand (PLP), 2 pockets (best druggability 0.48). MolNFT v1 #188304 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7TLM
- Type
- protein
- Length
- 415 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cysteine desulfurase
- EC
- 2.8.1.7
- UniProt
- C8W9P2
- Ligands
- PLP
- Pockets
- 2 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cysteine desulfurase (EC 2.8.1.7) | protein | 415 | 45% helix, 17% strand | C8W9P2 |
Ligands and binding sites
- PLP · Pyridoxal-5'-phosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 88 | 0.48 | 0.82 | 25 | PLP |
| 2 | 113 | 0.40 | 0.76 | 19 | empty |
Modifications
Observed in the structure: 1 cofactor, 1 modified (pyridoxal phosphate Schiff base, oxidation).
Compared structures
- 7TLM · Structure of Atopobium parvulum SufS · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C8W9P2
- Elsewhere: RCSB PDB 7TLM · PDBe 7TLM · UniProt C8W9P2
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.