MolNFT v1 · #188293 · protein
SARS-cov-2 omicron 1-rbd up spike protein trimer without the P986-P987 stabilizing mutations (S-gsas-omicron)
7TL9: “SARS-cov-2 omicron 1-rbd up spike protein trimer without the P986-P987 stabilizing mutations (S-gsas-omicron)”. Electron microscopy, 3 ligands (NAG, BMA, MAN). MolNFT v1 #188293 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 7TL9
- Type
- protein
- Length
- 3,083 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- NAG, BMA, MAN
Structure
electron microscopy · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 1050 | — | P0DTC2 |
| B | — | protein | 1028 | — | P0DTC2 |
| C | — | protein | 1005 | — | P0DTC2 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 57 copies · chains A, B, C
- BMA · beta-D-mannopyranose · sugar · 2 copies
- MAN · alpha-D-mannopyranose · sugar
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7TL9 · SARS-CoV-2 Omicron 1-RBD up Spike Protein Trimer without the P986-P987 stabilizing… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7TL9 · PDBe 7TL9 · UniProt P0DTC2
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