MolNFT v1 · #18820 · protein
Solution structure of VPS27 amino-terminal uim-ubiquitin complex
1Q0W · Vacuolar protein sorting-associated protein VPS27: “Solution structure of VPS27 amino-terminal uim-ubiquitin complex”. Solution nmr. MolNFT v1 #18820 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1Q0W
- Type
- protein
- Length
- 100 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Vacuolar protein sorting-associated protein VPS27; Ubiquitin
- UniProt
- P40343, P61864
Structure
solution nmr · 2 distinct chains · 35% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Vacuolar protein sorting-associated protein VPS27 | protein | 24 | 79% helix, 0% strand | P40343 |
| B | Ubiquitin | protein | 76 | 21% helix, 36% strand | P61864 |
Interfaces
1 interface between chains.
- A–B · 588 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 1Q0W · Solution structure of Vps27 amino-terminal UIM-ubiquitin complex · the same entry in another collection · chain B against B, TM-score 1.00
- P40343 · AlphaFold monomer V2.0 prediction for vacuolar protein sorting- associated protein 27… · a predicted model of the same protein · chain A against A, TM-score 0.68
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P40343
- Every structure of UniProt P61864
- Elsewhere: RCSB PDB 1Q0W · PDBe 1Q0W · UniProt P40343 · UniProt P61864
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