MolNFT v1 · #18816 · protein

Binary structure of T4DAM with adohcy

1Q0S · DNA adenine methylase: “Binary structure of T4DAM with adohcy”. X-ray diffraction, 1 ligand (SAH), 1 pocket (best druggability 0.72). MolNFT v1 #18816 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1Q0S
Type: protein
Length: 241 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA adenine methylase
EC: 2.1.1.72
UniProt: P04392
Ligands: SAH
Pockets: 1 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA adenine methylase (EC 2.1.1.72)	protein	241	41% helix, 14% strand	P04392

Ligands and binding sites

SAH · S-adenosyl-L-homocysteine · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	128	0.72	0.92	36	SAH

Compared structures

1Q0S · Binary Structure of T4DAM with AdoHcy · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P04392
Elsewhere: RCSB PDB 1Q0S · PDBe 1Q0S · UniProt P04392

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