MolNFT v1 · #188130 · RNA
Crystal structure of an E. COLI thim riboswitch bound to thiamine, manganese ions
7TD7: “Crystal structure of an E. COLI thim riboswitch bound to thiamine, manganese ions”. X-ray diffraction, 3 ligands (VIB, MG, MN). MolNFT v1 #188130 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7TD7
- Type
- RNA
- Length
- 77 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- VIB, MG, MN
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | rna | 77 | — | — |
Ligands and binding sites
- VIB · 3-(4-amino-2-methyl-pyrimidin-5-ylmethyl)-5-(2-hydroxy-ethyl)-4-methyl-thiazol-3-ium · ligand · chains A
- MG · Magnesium ion · metal · 2 copies · chains A
- MN · Manganese (II) ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7TD7 · Crystal structure of an E. coli thiM riboswitch bound to thiamine, manganese ions · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7TD7 · PDBe 7TD7
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