MolNFT v1 · #188121 · protein
Methanobactin biosynthetic protein complex of mbnb and mbnc from methylosinus trichosporium OB3B, H210S mutant
7TCW · Methanobactin biosynthesis cassette protein mbnb: “Methanobactin biosynthetic protein complex of mbnb and mbnc from methylosinus trichosporium OB3B, H210S mutant”. X-ray diffraction, 2 ligands (FE, SO4), 8 pockets (best druggability…
- PDB
- 7TCW
- Type
- protein
- Length
- 915 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Methanobactin biosynthesis cassette protein mbnb; Methanobactin biosynthesis cassette…
- UniProt
- A0A2D2D5M1, A0A2D2CY73
- Ligands
- FE, SO4
- Pockets
- 8 · best druggability 0.79
Structure
x-ray diffraction · 3 distinct chains · 42% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Methanobactin biosynthesis cassette protein mbnb | protein | 263 | 44% helix, 20% strand | A0A2D2D5M1 |
| C | Methanobactin biosynthesis cassette protein mbnc | protein | 195 | 42% helix, 12% strand | A0A2D2CY73 |
| D | Methanobactin biosynthesis cassette protein mbnc | protein | 194 | 40% helix, 13% strand | A0A2D2CY73 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 830 | 0.79 | 0.82 | 73 | empty |
| 2 | 1128 | 0.76 | 0.79 | 89 | FE, SO4 |
| 3 | 1139 | 0.75 | 0.78 | 81 | FE, SO4 |
| 4 | 264 | 0.59 | 0.79 | 38 | empty |
| 5 | 89 | 0.39 | 0.77 | 17 | empty |
Interfaces
3 interfaces between chains.
- B–C · 2260 Ų buried · 22 hydrogen bonds · protein-protein
- A–D · 2197 Ų buried · 26 hydrogen bonds · protein-protein
- A–B · 522 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 7TCW · Methanobactin biosynthetic protein complex of MbnB and MbnC from Methylosinus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2D2D5M1
- Every structure of UniProt A0A2D2CY73
- Elsewhere: RCSB PDB 7TCW · PDBe 7TCW · UniProt A0A2D2D5M1 · UniProt A0A2D2CY73
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