MolNFT v1 · #188088 · protein
Crystal structure of plasmepsin X from plasmodium vivax in complex with WM4
7TBE: “Crystal structure of plasmepsin X from plasmodium vivax in complex with WM4”. X-ray diffraction, 4 ligands (I0I, NAG, BMA). MolNFT v1 #188088 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7TBE
- Type
- protein
- Length
- 1,396 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A1G4H6I9
- Ligands
- I0I, NAG, BMA, SO4
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 357 | — | A0A1G4H6I9 |
| C | — | protein | 342 | — | A0A1G4H6I9 |
| D | — | protein | 340 | — | A0A1G4H6I9 |
Ligands and binding sites
- I0I · 3-[(R)-[(2E,4S)-2-imino-4-methyl-6-oxo-4-(propan-2-yl)-1,3-diazinan-1-yl](phenyl)methyl]-N-[(1S)-1-phenylethyl]benzamide · ligand · 4 copies · chains A, B, C, D
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 6 copies · chains A, B, C
- BMA · beta-D-mannopyranose · sugar
- SO4 · Sulfate ion · ion · chains C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7TBE · Crystal structure of Plasmepsin X from Plasmodium vivax in complex with WM4 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1G4H6I9
- Elsewhere: RCSB PDB 7TBE · PDBe 7TBE · UniProt A0A1G4H6I9
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