MolNFT v1 · #188087 · protein
Crystal structure of plasmepsin X from plasmodium vivax in complex with WM382
7TBD: “Crystal structure of plasmepsin X from plasmodium vivax in complex with WM382”. X-ray diffraction, 3 ligands (I0L, NAG, BMA). MolNFT v1 #188087 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7TBD
- Type
- protein
- Length
- 702 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A1G4H6I9
- Ligands
- I0L, NAG, BMA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 357 | — | A0A1G4H6I9 |
| B | — | protein | 345 | — | A0A1G4H6I9 |
Ligands and binding sites
- I0L · (4R)-4-[(2E)-4,4-diethyl-2-imino-6-oxo-1,3-diazinan-1-yl]-N-[(4S)-2,2-dimethyl-3,4-dihydro-2H-1-benzopyran-4-yl]-3,4-dihydro-2H-1-benzopyran-6-carboxamide · ligand · 2 copies · chains A, B
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains A, B
- BMA · beta-D-mannopyranose · sugar
- GOL · Glycerol · additive · 2 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7TBD · Crystal structure of Plasmepsin X from Plasmodium vivax in complex with WM382 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1G4H6I9
- Elsewhere: RCSB PDB 7TBD · PDBe 7TBD · UniProt A0A1G4H6I9
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