MolNFT v1 · #188038 · protein
Structure of PSMBETA2 nanotubes
7T8U · Antibacterial protein: “Structure of PSMBETA2 nanotubes”. Electron microscopy, 1 pocket (best druggability 0.48). MolNFT v1 #188038 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7T8U
- Type
- protein
- Length
- 173 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Antibacterial protein
- UniProt
- H9BRQ4
- Pockets
- 1 · best druggability 0.48
Structure
electron microscopy · 2 distinct chains · 80% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Antibacterial protein | protein | 44 | 80% helix, 0% strand | H9BRQ4 |
| B, C, D | Antibacterial protein | protein | 43 | 81% helix, 0% strand | H9BRQ4 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 61 | 0.48 | 0.84 | 19 | empty |
Interfaces
5 interfaces between chains.
- A–C · 644 Ų buried · 5 hydrogen bonds · protein-protein
- B–D · 294 Ų buried · 0 hydrogen bonds · protein-protein
- C–D · 127 Ų buried · 0 hydrogen bonds · protein-protein
- A–B · 67 Ų buried · 2 hydrogen bonds · protein-protein
- A–D · 43 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 7T8U · Structure of PSMbeta2 nanotubes · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt H9BRQ4
- Elsewhere: RCSB PDB 7T8U · PDBe 7T8U · UniProt H9BRQ4
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