MolNFT v1 · #187900 · protein
Crystal structure of the succinyl-diaminopimelate desuccinylase (dape) from acinetobacter baumannii in complex with succinic acid
7T1Q: “Crystal structure of the succinyl-diaminopimelate desuccinylase (dape) from acinetobacter baumannii in…”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #187900 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7T1Q
- Type
- protein
- Length
- 752 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A3M8H2
- Ligands
- ZN
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 377 | — | A3M8H2 |
| B | — | protein | 375 | — | A3M8H2 |
Ligands and binding sites
- ZN · Zinc ion · metal · 4 copies · chains A, B
- SIN · Succinic acid · additive · 2 copies · chains A, B
- ACT · Acetate ion · additive · 2 copies · chains A, B
- PGE · Triethylene glycol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7T1Q · Crystal Structure of the Succinyl-diaminopimelate Desuccinylase (DapE) from Acinetobacter… · the same entry in another collection · chain A against A, TM-score 1.00
- A3M8H2 · AlphaFold monomer V2.0 prediction for succinyl-diaminopimelate desuccinylase (A3M8H2) · a predicted model of the same protein · chain A against A, TM-score 0.81
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A3M8H2
- Elsewhere: RCSB PDB 7T1Q · PDBe 7T1Q · UniProt A3M8H2
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