MolNFT v1 · #187874 · protein

Structure of the N-terminal nuclease and origin binding domain of human parvovirus B19

7SZX · NS1 protein: “Structure of the N-terminal nuclease and origin binding domain of human parvovirus B19”. X-ray diffraction, 1 ligand (MG), 1 pocket (best druggability 0.30). MolNFT v1 #187874 on GenesisL1: 3D structure, binding sites…

PDB: 7SZX
Type: protein
Length: 171 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: NS1 protein
UniProt: A3F778
Ligands: MG
Pockets: 1 · best druggability 0.30

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	NS1 protein	protein	171	39% helix, 21% strand	A3F778

Ligands and binding sites

MG · Magnesium ion · metal · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	65	0.30	0.74	17	empty

Compared structures

7SZX · Structure of the N-terminal nuclease and origin binding domain of Human Parvovirus B19 · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A3F778
Elsewhere: RCSB PDB 7SZX · PDBe 7SZX · UniProt A3F778

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