MolNFT v1 · #187813 · protein

Yeast lon (PIM1) with endogenous substrate

7SXO: “Yeast lon (PIM1) with endogenous substrate”. Electron microscopy, 3 ligands (ATP, ADP, MG). MolNFT v1 #187813 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7SXO
Type: protein
Length: 3,169 residues
Chains: 7
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P36775
Ligands: ATP, ADP, MG

Structure

electron microscopy · 7 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	544	—	P36775
B	—	protein	487	—	P36775
C	—	protein	487	—	P36775
D	—	protein	547	—	P36775
E	—	protein	546	—	P36775
F	—	protein	549	—	P36775
G	—	protein	9	—	—

Ligands and binding sites

ATP · Adenosine-5'-triphosphate · ligand · 4 copies · chains A, F, C, D, E
ADP · Adenosine-5'-diphosphate · ligand · 2 copies · chains A, B, C
MG · Magnesium ion · metal · 4 copies · chains A, F, D, E

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7SXO · Yeast Lon (PIM1) with endogenous substrate · the same entry in another collection · chain G against G, TM-score 1.00
P36775 · AlphaFold monomer V2.0 prediction for lon protease homolog, mitochondrial (P36775) · a predicted model of the same protein · chain D against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P36775
Elsewhere: RCSB PDB 7SXO · PDBe 7SXO · UniProt P36775

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