MolNFT v1 · #187770 · protein
Crystal structure of spaa-slh in complex with 4,6-pyr-beta-D-mannac- (1->4)-beta-D-glcnac-(1->3)-4,6-pyr-beta-D-mannacome
7SV4 · Surface (S-) layer glycoprotein: “Crystal structure of spaa-slh in complex with 4,6-pyr-beta-D-mannac…”. X-ray diffraction, 1 ligand (D4I). MolNFT v1 #187770 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7SV4
- Type
- protein
- Length
- 170 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Surface (S-) layer glycoprotein
- UniProt
- C1JZ07
- Ligands
- D4I
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Surface (S-) layer glycoprotein | protein | 170 | 42% helix, 4% strand | C1JZ07 |
Ligands and binding sites
- D4I · methyl 2-acetamido-4,6-O-[(1S)-1-carboxyethylidene]-2-deoxy-beta-D-mannopyranosyl-(1->4)-2-acetamido-2-deoxy-beta-D-glucopyranosyl-(1->3)-2-acetamido-4,6-O-[(1S)-1-carboxyethylidene]-2-deoxy-beta-D-mannopyranoside · ligand · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7SV4 · Crystal structure of SpaA-SLH in complex with 4,6-Pyr-beta-D-ManNAc-(1->4)-beta-D-GlcNAc-(… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C1JZ07
- Elsewhere: RCSB PDB 7SV4 · PDBe 7SV4 · UniProt C1JZ07
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