MolNFT v1 · #187703 · protein + DNA
Human endogenous retrovirus (herv-K) reverse transcriptase ternary complex with dsdna template primer and dntp
7SR6: “Human endogenous retrovirus (herv-K) reverse transcriptase ternary complex with dsdna template primer and dntp”. X-ray diffraction, 5 ligands (DCP, TTP, K). MolNFT v1 #187703 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 7SR6
- Type
- protein + DNA
- Length
- 2,082 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- V9H0F6
- Ligands
- DCP, TTP, K, MG, CL
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, F | — | protein | 566 | — | V9H0F6 |
| B, G | — | protein | 432 | — | V9H0F6 |
| D | — | dna | 23 | — | — |
| E | — | dna | 20 | — | — |
| H | — | dna | 23 | — | — |
| I | — | dna | 20 | — | — |
Ligands and binding sites
- DCP · 2'-deoxycytidine-5'-triphosphate · ligand · chains A, D, E
- TTP · Thymidine-5'-triphosphate · ligand · chains F, H, I
- K · Potassium ion · metal · 11 copies · chains A, B, D, F, H, G
- MG · Magnesium ion · metal · 5 copies · chains A, D, F, G
- CL · Chloride ion · ion · 2 copies · chains G
- DIO · 1,4-diethylene dioxide · additive · 34 copies · chains A, B, F, G, H
- EDO · 1,2-ethanediol · additive · 7 copies · chains A, B, F, G
- PG6 · 1-(2-methoxy-ethoxy)-2-{2-[2-(2-methoxy-ethoxy]-ethoxy}-ethane · additive · 2 copies · chains B, G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7SR6 · Human Endogenous Retrovirus (HERV-K) reverse transcriptase ternary complex with dsDNA… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt V9H0F6
- Elsewhere: RCSB PDB 7SR6 · PDBe 7SR6 · UniProt V9H0F6
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.