MolNFT v1 · #18768 · protein

Structural identification of a conserved appendage domain in the carboxyl-terminus of the copi gamma-subunit.

1PZD · Coatomer gamma subunit: “Structural identification of a conserved appendage domain in the carboxyl-terminus of the copi gamma-subunit.”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.25). MolNFT v1 #18768 on…

PDB: 1PZD
Type: protein
Length: 271 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Coatomer gamma subunit
UniProt: P53620
Ligands: SO4
Pockets: 1 · best druggability 0.25

Structure

x-ray diffraction · 1 distinct chain · 17% helix, 44% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Coatomer gamma subunit	protein	271	17% helix, 44% strand	P53620

Ligands and binding sites

SO4 · Sulfate ion · ion · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	52	0.25	0.73	16	empty

Compared structures

1PZD · Structural Identification of a conserved appendage domain in the carboxyl-terminus of the… · the same entry in another collection · chain A against A, TM-score 1.00
P53620 · AlphaFold monomer V2.0 prediction for coatomer subunit gamma-1 (P53620) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P53620
Elsewhere: RCSB PDB 1PZD · PDBe 1PZD · UniProt P53620

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