MolNFT v1 · #187649 · protein + RNA
Lam domain of human LARP1 in complex with aaaaaa oligonucleotide
7SOT · Isoform 2 of la-related protein 1: “Lam domain of human LARP1 in complex with aaaaaa oligonucleotide”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #187649 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7SOT
- Type
- protein + RNA
- Length
- 94 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Isoform 2 of la-related protein 1; RNA (5'-R(P*AP*AP*AP*AP*AP*A)-3')
- Ligands
- SO4
Structure
x-ray diffraction · 2 distinct chains · 54% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Isoform 2 of la-related protein 1 | protein | 91 | 54% helix, 11% strand | — |
| B | RNA (5'-R(P*AP*AP*AP*AP*AP*A)-3') | rna | 3 | — | — |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 430 Ų buried · 9 hydrogen bonds · protein-nucleic
Compared structures
- 7SOT · LaM domain of human LARP1 in complex with AAAAAA oligonucleotide · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7SOT · PDBe 7SOT
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