MolNFT v1 · #187592 · protein

Vanin-1 complexed with compound 3

7SLV: “Vanin-1 complexed with compound 3”. X-ray diffraction, 4 ligands (9TC, BMA, NAG). MolNFT v1 #187592 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7SLV
Type: protein
Length: 461 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: O95497
Ligands: 9TC, BMA, NAG, NA

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	461	—	O95497

Ligands and binding sites

9TC · (8-oxa-2-azaspiro[4.5]decan-2-yl)(2-{[(pyrazin-2-yl) methyl]amino}pyrimidin-5-yl)methanone · ligand · chains A
BMA · beta-D-mannopyranose · sugar · 7 copies · chains A
NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 6 copies · chains A
NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7SLV · Vanin-1 complexed with Compound 3 · the same entry in another collection · chain A against A, TM-score 1.00
O95497 · AlphaFold monomer V2.0 prediction for pantetheinase (O95497) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O95497
Elsewhere: RCSB PDB 7SLV · PDBe 7SLV · UniProt O95497

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