MolNFT v1 · #187573 · protein
Crystal structure of nipah virus matrix protein
7SKT: “Crystal structure of nipah virus matrix protein”. X-ray diffraction, 6 pockets (best druggability 0.63). MolNFT v1 #187573 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7SKT
- Type
- protein
- Length
- 559 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Matrix protein
- UniProt
- Q9IK90
- Pockets
- 6 · best druggability 0.63
Structure
x-ray diffraction · 2 distinct chains · 22% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Matrix protein | protein | 276 | 22% helix, 43% strand | Q9IK90 |
| B | Matrix protein | protein | 283 | 22% helix, 42% strand | Q9IK90 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 372 | 0.63 | 0.78 | 42 | empty |
| 2 | 128 | 0.51 | 0.79 | 24 | empty |
| 3 | 94 | 0.49 | 0.82 | 20 | empty |
| 4 | 95 | 0.46 | 0.80 | 19 | empty |
| 5 | 51 | 0.37 | 0.80 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 2363 Ų buried · 45 hydrogen bonds · protein-protein
Compared structures
- 7SKT · Crystal structure of Nipah virus matrix protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9IK90
- Elsewhere: RCSB PDB 7SKT · PDBe 7SKT · UniProt Q9IK90
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.