MolNFT v1 · #187505 · protein
Polysaccharide ribofuranosyl transferase from thermobacillus composti
7SHG: “Polysaccharide ribofuranosyl transferase from thermobacillus composti”. X-ray diffraction, 2 ligands (MG, CL), 11 pockets (best druggability 0.77). MolNFT v1 #187505 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7SHG
- Type
- protein
- Length
- 1,181 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribofuranosyl transferase
- UniProt
- L0EJI9
- Ligands
- MG, CL
- Pockets
- 11 · best druggability 0.77
Structure
x-ray diffraction · 2 distinct chains · 53% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribofuranosyl transferase | protein | 591 | 52% helix, 14% strand | L0EJI9 |
| B | Ribofuranosyl transferase | protein | 590 | 53% helix, 14% strand | L0EJI9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
11 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 998 | 0.77 | 0.79 | 94 | empty |
| 2 | 960 | 0.77 | 0.79 | 86 | empty |
| 3 | 298 | 0.54 | 0.75 | 25 | CL, MG |
| 4 | 262 | 0.52 | 0.75 | 26 | empty |
| 5 | 125 | 0.42 | 0.75 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 1036 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 7SHG · Polysaccharide ribofuranosyl transferase from Thermobacillus composti · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt L0EJI9
- Elsewhere: RCSB PDB 7SHG · PDBe 7SHG · UniProt L0EJI9
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