MolNFT v1 · #187412 · protein
The crystal structure of scoe in complex with intermediate
7SCP · Scoe protein: “The crystal structure of scoe in complex with intermediate”. X-ray diffraction, 2 ligands (8S6, FE2), 2 pockets (best druggability 0.82). MolNFT v1 #187412 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7SCP
- Type
- protein
- Length
- 294 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Scoe protein
- UniProt
- A0A3B6UEU3
- Ligands
- 8S6, FE2
- Pockets
- 2 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 21% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Scoe protein | protein | 294 | 21% helix, 27% strand | A0A3B6UEU3 |
Ligands and binding sites
- 8S6 · (3R)-3-(oxaloamino)butanoic acid · ligand · chains A
- FE2 · Fe (II) ion · metal · chains A
- EDO · 1,2-ethanediol · additive · 15 copies · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 145 | 0.82 | 0.98 | 37 | FE2, 8S6, GOL |
| 2 | 64 | 0.31 | 0.75 | 17 | EDO |
Compared structures
- 7SCP · The crystal structure of ScoE in complex with intermediate · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A3B6UEU3
- Elsewhere: RCSB PDB 7SCP · PDBe 7SCP · UniProt A0A3B6UEU3
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