MolNFT v1 · #187369 · protein
Structure of gldlm, the proton-powered motor that drives type IX protein secretion and gliding motility in capnocytophaga canimorsus
7SAZ · Gldm: “Structure of gldlm, the proton-powered motor that drives type IX protein secretion and gliding motility in…”. Electron microscopy, 7 pockets (best druggability 0.80). MolNFT v1 #187369 on GenesisL1: 3D structure, binding…
- PDB
- 7SAZ
- Type
- protein
- Length
- 722 residues
- Chains
- 7
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gldm; Gldl
- UniProt
- F9YQB7, F9YQB6
- Pockets
- 7 · best druggability 0.80
Structure
electron microscopy · 7 distinct chains · 71% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gldm | protein | 217 | 70% helix, 4% strand | F9YQB7 |
| B | Gldm | protein | 215 | 68% helix, 4% strand | F9YQB7 |
| C | Gldl | protein | 61 | 70% helix, 0% strand | F9YQB6 |
| D | Gldl | protein | 59 | 73% helix, 0% strand | F9YQB6 |
| E | Gldl | protein | 56 | 73% helix, 4% strand | F9YQB6 |
| F | Gldl | protein | 57 | 72% helix, 4% strand | F9YQB6 |
| G | Gldl | protein | 57 | 75% helix, 0% strand | F9YQB6 |
Pockets
7 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 849 | 0.80 | 0.82 | 79 | empty |
| 2 | 429 | 0.80 | 0.88 | 70 | empty |
| 3 | 516 | 0.72 | 0.81 | 48 | empty |
| 4 | 341 | 0.61 | 0.78 | 30 | empty |
| 5 | 230 | 0.57 | 0.79 | 29 | empty |
Interfaces
16 interfaces between chains.
- A–B · 1736 Ų buried · 11 hydrogen bonds · protein-protein
- A–E · 595 Ų buried · 3 hydrogen bonds · protein-protein
- D–E · 569 Ų buried · 1 hydrogen bond · protein-protein
- C–G · 558 Ų buried · 3 hydrogen bonds · protein-protein
- F–G · 555 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 7SAZ · Structure of GldLM, the proton-powered motor that drives Type IX protein secretion and… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F9YQB7
- Every structure of UniProt F9YQB6
- Elsewhere: RCSB PDB 7SAZ · PDBe 7SAZ · UniProt F9YQB7 · UniProt F9YQB6
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