MolNFT v1 · #187341 · protein
Helicobacter hepaticus ccsba open conformation
7S9Y · Cytochrome C biogenesis protein: “Helicobacter hepaticus ccsba open conformation”. Electron microscopy, 2 ligands (HEB, PTY), 12 pockets (best druggability 0.86). MolNFT v1 #187341 on GenesisL1: 3D structure, binding sites and…
- PDB
- 7S9Y
- Type
- protein
- Length
- 901 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C biogenesis protein
- UniProt
- Q7VHG9
- Ligands
- HEB, PTY
- Pockets
- 12 · best druggability 0.86
Structure
electron microscopy · 1 distinct chain · 52% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome C biogenesis protein | protein | 901 | 52% helix, 15% strand | Q7VHG9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
12 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 961 | 0.86 | 0.87 | 78 | HEB, PTY |
| 2 | 228 | 0.83 | 0.95 | 36 | HEB |
| 3 | 1025 | 0.77 | 0.79 | 86 | empty |
| 4 | 101 | 0.76 | 0.96 | 26 | empty |
| 5 | 158 | 0.62 | 0.84 | 28 | empty |
Compared structures
- 7S9Y · Helicobacter Hepaticus CcsBA Open Conformation · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7VHG9
- Elsewhere: RCSB PDB 7S9Y · PDBe 7S9Y · UniProt Q7VHG9
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