MolNFT v1 · #18723 · protein

Crystal structure of E51C/E54C psaz from A.FAECALIS with clanp probe

1PY0 · Pseudoazurin: “Crystal structure of E51C/E54C psaz from A.FAECALIS with clanp probe”. X-ray diffraction, 4 ligands (YMA, ZN, Y1). MolNFT v1 #18723 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1PY0
Type: protein
Length: 122 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pseudoazurin
UniProt: P04377
Ligands: YMA, ZN, Y1, SO4

Structure

x-ray diffraction · 1 distinct chain · 16% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pseudoazurin	protein	122	16% helix, 39% strand	P04377

Ligands and binding sites

YMA · 7,10,13-tri(carboxymethyl)-5,15-dioxo-4,7,10,13,16-pentaaza-1,19-dithianonadecane · ligand · chains A
ZN · Zinc ion · metal · chains A
Y1 · Yttrium ion · metal
SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 2 covalent (covalent ligand).

Compared structures

1PY0 · Crystal structure of E51C/E54C Psaz from A.faecalis with CLaNP probe · the same entry in another collection · chain A against A, TM-score 1.00
P04377 · AlphaFold monomer V2.0 prediction for pseudoazurin (P04377) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P04377
Elsewhere: RCSB PDB 1PY0 · PDBe 1PY0 · UniProt P04377

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