MolNFT v1 · #187215 · protein
Solution NMR structure of substrate bound peptidase domain from PCAT1
7S5J · Peptidase C39: “Solution NMR structure of substrate bound peptidase domain from PCAT1”. Solution nmr, 2 pockets (best druggability 0.48). MolNFT v1 #187215 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7S5J
- Type
- protein
- Length
- 175 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peptidase C39; Cta peptide
- UniProt
- A3DCU1, A3DCU2
- Pockets
- 2 · best druggability 0.48
Structure
solution nmr · 2 distinct chains · 29% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptidase C39 | protein | 151 | 30% helix, 25% strand | A3DCU1 |
| B | Cta peptide | protein | 24 | 25% helix, 17% strand | A3DCU2 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 79 | 0.48 | 0.82 | 19 | empty |
| 2 | 69 | 0.28 | 0.72 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 1105 Ų buried · 22 hydrogen bonds · protein-protein
Compared structures
- 7S5J · Solution NMR structure of substrate bound peptidase domain from PCAT1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A3DCU1
- Every structure of UniProt A3DCU2
- Elsewhere: RCSB PDB 7S5J · PDBe 7S5J · UniProt A3DCU1 · UniProt A3DCU2
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