MolNFT v1 · #186997 · protein
Cryoem structure of rbd domain of COVID-19 in complex with legobody
7RXD: “Cryoem structure of rbd domain of COVID-19 in complex with legobody”. Electron microscopy, 1 ligand (GLC). MolNFT v1 #186997 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7RXD
- Type
- protein
- Length
- 1,148 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A4Z0THX4, P99134, P06654, P0DTC2
- Ligands
- GLC
Structure
electron microscopy · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 439 | — | A0A4Z0THX4, P99134, P06654 |
| H | — | protein | 207 | — | — |
| L | — | protein | 204 | — | — |
| N | — | protein | 125 | — | — |
| R | — | protein | 173 | — | P0DTC2 |
Ligands and binding sites
- GLC · alpha-D-glucopyranose · sugar · 2 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7RXD · CryoEM structure of RBD domain of COVID-19 in complex with Legobody · the same entry in another collection · chain H against H, TM-score 1.00
- P06654 · AlphaFold monomer V2.0 prediction for immunoglobulin G-binding protein G (P06654) · a predicted model of the same protein · chain B against A, TM-score 0.19
- P99134 · AlphaFold monomer V2.0 prediction for immunoglobulin G-binding protein a (P99134) · a predicted model of the same protein · chain B against A, TM-score 0.17
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A4Z0THX4
- Every structure of UniProt P99134
- Every structure of UniProt P06654
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7RXD · PDBe 7RXD · UniProt A0A4Z0THX4 · UniProt P99134 · UniProt P06654 · UniProt P0DTC2
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