MolNFT v1 · #186880 · protein
Crystal structure of an anti-lysozyme nanobody in complex with an anti-nanobody Fab "nabfab"
7RTH: “Crystal structure of an anti-lysozyme nanobody in complex with an anti-nanobody Fab "nabfab"”. X-ray diffraction, 2 ligands (PO4, CL). MolNFT v1 #186880 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7RTH
- Type
- protein
- Length
- 4,958 residues
- Chains
- 27
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- PO4, CL
Structure
x-ray diffraction · 22 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 201 | — | — |
| B | — | protein | 212 | — | — |
| C | — | protein | 204 | — | — |
| D | — | protein | 228 | — | — |
| E, G | — | protein | 209 | — | — |
| F | — | protein | 225 | — | — |
| H | — | protein | 225 | — | — |
| I, Q | — | protein | 203 | — | — |
| J | — | protein | 226 | — | — |
| K | — | protein | 210 | — | — |
| L | — | protein | 223 | — | — |
| M | — | protein | 207 | — | — |
| N | — | protein | 221 | — | — |
| O | — | protein | 202 | — | — |
| P | — | protein | 218 | — | — |
| R | — | protein | 217 | — | — |
| a, c, i | — | protein | 125 | — | — |
| e | — | protein | 124 | — | — |
| g, o | — | protein | 123 | — | — |
| k | — | protein | 126 | — | — |
| m | — | protein | 121 | — | — |
| q | — | protein | 123 | — | — |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 50 copies · chains B, C, D, c, E, F, G, I, H, J, K, M, L, N, O, Q, R, a, e, g, i, m, o, P, q
- CL · Chloride ion · ion · 29 copies · chains B, a, C, E, D, c, F, G, H, I, J, K, L, M, N, m, O, P, R, e, g, q
- GOL · Glycerol · additive · 9 copies · chains B, C, D, E, G, I, L, k, c
- PEG · Di(hydroxyethyl)ether · additive · 3 copies · chains F, e, H, N
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7RTH · Crystal structure of an anti-lysozyme nanobody in complex with an anti-nanobody Fab… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7RTH · PDBe 7RTH
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