MolNFT v1 · #186700 · protein

Crystal structure of [I11L]CYCLOVIOLACIN O2

7RMR: “Crystal structure of [I11L]CYCLOVIOLACIN O2”. X-ray diffraction, 1 ligand (SCN). MolNFT v1 #186700 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7RMR
Type: protein
Length: 60 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: [I11L]CYCLOVIOLACIN O2
UniProt: P58434
Ligands: SCN

Structure

x-ray diffraction · 1 distinct chain · 17% helix, 37% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	[I11L]CYCLOVIOLACIN O2	protein	30	17% helix, 37% strand	P58434

Ligands and binding sites

SCN · Thiocyanate ion · ion · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 290 Å² buried · 3 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 27 d-amino, 6 disulfide (D-amino acid, disulfide).

Compared structures

7RMR · Crystal structure of [I11L]cycloviolacin O2 · the same entry in another collection · chain A against A, TM-score 1.00
P58434 · AlphaFold monomer V2.0 prediction for cycloviolacin-O2 (P58434) · a predicted model of the same protein · chain A against A, TM-score 0.76

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P58434
Elsewhere: RCSB PDB 7RMR · PDBe 7RMR · UniProt P58434

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